HaemAtlas Marker List for Immune Cells - Watkins et al. (2009)

Description

CellMix access key: “HaemAtlas”

Marker list created from the HaemAtlas dataset (Watkins et al. (2009)). It contains markers for CD4+ and CD8+ T-cells, lymphocytes, monocytes, B-cells, NK cells, and granulocytes.

Usage

.mHaemAtlas(id = c("ILMN", "nuID", "ENTREZID", "SYMBOL", "_ILMN", "_ENSEMBL", "_SYMBOL"))

Arguments

id
original identifier to use.

Details

The MarkerList object is generated by the internal function .mHaemAtlas, to which arguments can be passed via MarkerList('HaemAtlas', ...) to build lists using different identifiers.

However, it is recommended to rather use the function convertIDs to convert the primary identifiers into other identifiers, using up-to-date annotation packages.

References

Watkins Na, Gusnanto A, Bono Bd, De S, Miranda-Saavedra D, Hardie DL, Angenent WGJ, Attwood AP, Ellis PD, Erber W, Foad NS, Garner SF, Isacke CM, Jolley J, Koch K, Macaulay IC, Morley SL, Rendon A, Rice KM, Taylor N, Thijssen-Timmer DC, Tijssen MR, Schoot CEvd, Wernisch L, Winzer T, Dudbridge F, Buckley CD, Langford CF, Teichmann S, Gottgens B and Ouwehand WH (2009). "A HaemAtlas: characterizing gene expression in differentiated human blood cells." _Blood_, *113*(19), pp. e1-9. ISSN 1528-0020, , .