CellMix access key: “Abbas”
Curated list of marker probesets for immune cell types
from the Abbas data (Abbas et al.
(2009)). It contains Affymetrix probesets of markers for
B cells, dendritic cells, monocytes, neutrophils, NK
cells and T cells, as well as for the lymphoid and
myeloid lineages, and the general category of all these
immune cells.
.mAbbas(sparsity = 0.8, id = c("AFFY", "ENTREZID", "SYMBOL"))
sparseness)Supplementary Table 1 of Abbas et al. (2009) Found at: doi:10.1371/journal.pone.0006098.s001 (0.11 MB PDF)
The MarkerList object is generated by the internal
function .mAbbas, to which arguments can be passed
via MarkerList('Abbas', ...) to build lists, using
different original identifiers and filtering threshold.
However, it is recommended to rather use the function
convertIDs to convert the primary
identifiers into other identifiers, using up-to-date
annotation packages.
The markers are ordered in each cell type by decreasing
sparsity value, i.e. from the more to the less cell
type-specific, computed from the optimised signature
matrix Abbas.
Abbas AR, Wolslegel K, Seshasayee D, Modrusan Z and Clark
HF (2009). "Deconvolution of blood microarray data
identifies cellular activation patterns in systemic lupus
erythematosus." _PloS one_, *4*(7), pp. e6098. ISSN
1932-6203,