Compute Cell-Specific Statistics

Description

csTopTable is a generic function that returns statistics for each genes, at the cell type levels. It is used on deconvolution results from ged.

Usage

csTopTable(x, ...)

S3 (matrix)
`csTopTable`(x, n = 100L, ct = NULL, decreasing = FALSE, ...)

S3 (array)
`csTopTable`(x, ...)

S3 (character)
`csTopTable`(x, ...)

S3 (NMFfit)
`csTopTable`(x, ...)

S3 (NMFfitX)
`csTopTable`(x, ...)

Arguments

x: data object, typically returned by ged.
...: extra parameters passed to subsequent calls.
n: maximum number of features to extract -- in each cell type.
ct: specifies the cell type for which one wants to extract the top features.
decreasing: logical that indicates the feature ordering, based on their p-values or FDRs.