GEDsave. CellMix 1.6

Description

These functions are used internally to work with the gene expression dataset registry within the CellMix package.

GEDpath returns/sets the path to the local directory where CellMix data (e.g., cache) are stored.

GEDtmp returns the path to the local directory where downloaded data from GEO are stored.

GEDcache adds an ExpressionSet object or an rds file to the local cache.

GEDsave(x, force = FALSE)

GEDpath(..., create = TRUE, reset = NULL)

GEDtmp(..., create = TRUE)

GEDcache(key, object)

x: GEDdata_entry object or list of GEDdata_entry objects. If missing then all entries are used.
force: logical to force saving dataset(s)
reset: new value for the local directory
key: unique dataset identifier. For datasets that are registered in the CellMix data registry, this correspond to the entry key.
object: ExpressionSet object to add to cache or the path to an existing RDS file that contains such an object.
...: path parts passed to file.path to be appended to the main path.
create: logical that indicates if the directory should be created if it does not exists.

GEDsave saves the primary dataset loaded in the registry on disk.