Gene Expression Deconvolution

Description

Gene Expression Deconvolution

Prints/retrieve technical information or data about the CellMix package.

Usage

CellMix()

Details

Package: CellMix
Type: Package
Version: 1.0
Date: 2011-11-01
License: GPL (>= 2)
LazyLoad: yes

Examples


# some technical info about the package
CellMix()
## CellMix package info:
## * Version: 1.6
## * Data path: /home/renaud/R-data/CellMix
## * Registries:
## An object of class 'registry' with 8 entries.
##                                                                                             Description
## score                                                          Methods to score and select marker genes
## data                    Benchmarks datasets that contain cell type signatures and/or sample proportions
## markers                                                Lists of marker gene for a variety of cell types
## algorithms                                                     Gene expression deconvolution algorithms
## NMF::algorithm                                             Algorithms to solve MF optimisation problems
## pkgmaker::extra_handler                              Handler functions for package-specific extra tasks
## pkgmaker::extra_action                             Handler functions for package-specific extra actions
## NMF::seed                                                     Initialization methods for NMF algorithms
##                         Entries   Parent
## score                         4         
## data                         13         
## markers                      10         
## algorithms                   12         
## NMF::algorithm                8      NMF
## pkgmaker::extra_handler       1 pkgmaker
## pkgmaker::extra_action        2 pkgmaker
## NMF::seed                     1      NMF

Author

Renaud Gaujoux renaud@cbio.uct.ac.za Maintainer: Renaud Gaujoux renaud@cbio.uct.ac.za