Marker gene list for Human tissues created from the
markersGrigoryev dataset.
Note this list includes markers for both single and
multiple cell types. Each kind can be selected using
argument select when loading it with
MarkerList. Possible values are:
'all' all kinds, i.e. single
and multiple; 'single' markers for single
cell type only; 'multiple' markers for
multiple cell types only.
# all markers in the list
ml <- MarkerList('Grigoryev')
ml
## <object of class: MarkerList>
## Types: B cells, Eosinophils, ..., WBC (total: 11)
## Mode: character
## setName: Grigoryev
## geneIds: 35150_at, 244097_at, ..., 207332_s_at (total: 157)
## geneIdType: Annotation (hgu133plus2.db)
## collectionType: Null
## geneValues: NA
## details: use 'details(object)'
names(ml)
## [1] "B cells" "Eosinophils" "Monocyte, B cell"
## [4] "Monocytes" "Monocyte, T, B cells" "Neutrophils"
## [7] "NK" "Platelets" "T, B cells"
## [10] "T cells" "WBC"
# only the ones for single cell types
ml <- MarkerList('Grigoryev', select = 'single')
names(ml)
## [1] "B cells" "Eosinophils" "Monocytes" "Neutrophils" "NK"
## [6] "Platelets" "T cells" "WBC"